Adaptive Optics Microscopy Oscar Azucena (UCSC) Changes in the index of refraction due to tissue composition limit the resolving power of biological microscopy. This effect is more pronounced in deep tissue imaging where the light travels through many layers of cellular structures including cytoplasm and the plasma membrane. Many important biological processes occur in deep tissue such as stem cell division, neurogenesis and the key developmental events following fertilization. A method that can be used to improve deep tissue imaging is Adaptive Optics (AO). AO is a technique used in astronomy to measure and correct the aberration introduced by turbulence in the optical path. AO has also been applied to vision science to enhance our understanding of the human eye. Two popular techniques for improving resolution in optical systems are confocal and two photon microscopy. These techniques also suffer from the aberration introduced by the tissue and could be improved upon by using AO. Most adaptive optics microscope systems so far have not directly measured the wavefront due to the complexity of adding a wavefront sensor in an optical system and the lack of a natural point-source reference such as the “guide-star” used in astronomy and vision science. Instead, most AO scanning microscopy systems have corrected the wavefront by optimizing a signal received at a photo-detector by using a hill-climbing algorithm. While there is a lot of important research being done in AO microscopy, many of the AO systems are specific to each microscope and a universal method for measuring the wavefront (or the results of the correction algorithm) is not currently available. A method for measuring the wavefront aberrations induced by a Drosophila embryo by using a Shack-Hartmann wavefront sensor and light emitted from an imbedded florescent microsphere will be presented. The Drosophila embryo is well suited to analysis as it is approximately 200 μm in diameter, rich in cytoplasm and amenable to experimental manipulation.:wq